Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKKTIYFICTGNSCRSQMAEGWGKEILGEGWNVYSAGIETHGVNPKAIEAMKEVDIDISNHTSDLIDNDILKQSDLVVTLCSDADNNCPILPPNVKKEHWGFDDPAGKEWSEFQRVRDEIKLAIEKFKLR
1LK0 Chain:B ((2-131))
-DKKTIYFICTGNSCRSQMAEGWGKEILGEGWNVYSAGIETHGVNPKAIEAMKEVDIDISNHTSDLIDNDILKQSDLVVTLCSDADNNLPILPPNVKKEHWGFDDPAGKEWSEFQRVRDEIKLAIEKFKLR
General information:
TITO was launched using:
RESULT:
Template:
1LK0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54782 for 1013 contacts (-54.1/contact) +
2D Compatibility (PS) -14633 + (NN) -10614 + (LL) 208
1D Compatibility (HY) -17200 + (ID) 6450
Total energy: -103471.0 ( -102.14 by residue)
QMean score : 0.691
(partial model without unconserved sides chains):
PDB file :
Tito_1LK0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LK0-query.scw
PDB file :
Tito_Scwrl_1LK0.pdb
: