Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLENVF--VKKGNKNI--LDGCNFNFEKGKSYALVGESGAGKSTLLNIIAGFEDVSQGSIYIE---------DKLLKKKVDFYRYTLGYLFQNFALLENQTISQNLDLALKFK-KNKKDNMNLKKEVLKKVGLDLDIKRIVS----SLSGGEQQRVALARLILKDPKIILADEPTGSLDTKNGKIVIDLLLKLLDEN-KTMIVVTHDLELAKRFDVIVNISELRS
1L2T Chain:B ((1-210))
MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRD----KIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVAR-------------
General information:
TITO was launched using:
RESULT:
Template:
1L2T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93632 for 1444 contacts (-64.8/contact) +
2D Compatibility (PS) -20599 + (NN) -8245 + (LL) 1608
1D Compatibility (HY) -16000 + (ID) 4100
Total energy: -140968.0 ( -97.62 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_1L2T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L2T-query.scw
PDB file :
Tito_Scwrl_1L2T.pdb
: