Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKN-NQLAFALSLFNGVLEKINEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNP-IIINECIELGKLYAEPNTPKFLNAILDSLSKKLAQKPLI
3R2D Chain:B ((2-133))
MRYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAYEYAKKLVDTAVRHIEEIDSIIEKHLKGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAGKFVNGVLSAIYKAYITS---
General information:
TITO was launched using:
RESULT:
Template:
3R2D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88164 for 1015 contacts (-86.9/contact) +
2D Compatibility (PS) -13970 + (NN) -8299 + (LL) 384
1D Compatibility (HY) -12400 + (ID) 2250
Total energy: -124699.0 ( -122.86 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_3R2D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R2D-query.scw
PDB file :
Tito_Scwrl_3R2D.pdb
: