Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKYSAIPTPCYALESERLEKNAKILEIVRQQSGAKVLLALKGYAFWREFGILRQKLNGCCASGLYEAKLAFEEFGGRESHKEICVYSPAFKEAEMSAILPLATSIIFNSFHQYATYKDRILDKNKQLENLGLSPIKMGLRINPLYSEVTPAIYNPCSKMSRLGITPSGFEKGVKEHGLEGVSGLHFHTHCEQNADALCRTLEHVERHFKPYLENMAWVNFGGGHHITRSDYDVNLLIQTIKDFKERYHNTEVILEPGEAIGWQCGFLIASVIDIVQNDQEIAILDASFSAHMPDCLEMPYRPSILK---VSVENDEEIIEVEKGENQGAFSYFLGGPTCLAGDFMGSFSFETPLKRGDKIVFQDMLHYTIVKNNSFNGVPLPSLAKIDSQG-FKILKSFSYEDYKNRN |
| 3N29 Chain:B ((42-418)) | ------IQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYM-----DKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQSKT-QKNS-----------LGLRCNVEFS----------GRYSRLGIRAKDFEN----VDLNAIEGLHFHALCEESADALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKY-GVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKENE----FAYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLDHKNELQMIREFSYKDYSLRN |
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General information:
TITO was launched using:
| RESULT:
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Template: 3N29.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -253567 for 3054 contacts (-83.0/contact) +
2D Compatibility (PS) -38876 + (NN) -13158 + (LL) 1880
1D Compatibility (HY) -39200 + (ID) 9100
Total energy: -352021.0 ( -115.27 by residue)
QMean score : 0.592
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