Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVSRFLNAIDPFNLGVLLSRFQIKNGCIYGVCSYKVSKFTPGYEESKARVLNALNILSKHQIWQSNQESVTKVKGTFVFILENDLHLDENSFYKKLLNLIIDNDFFNRSHLVTPSNGTNSHPELHRSITPREAARIQSFSDDYIFYGNKTSVCKQIGNAVPPLLALALGKAILKSARNDTNPSR
4DA4 Chain:B ((814-865))
-------------------------------------------------------------------------------------------------------------------------HPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPPPLAKAIGLEIKLCLLS------
General information:
TITO was launched using:
RESULT:
Template:
4DA4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12374 for 270 contacts (-45.8/contact) +
2D Compatibility (PS) -5503 + (NN) -2756 + (LL) 8000
1D Compatibility (HY) -1200 + (ID) 1400
Total energy: -15233.0 ( -56.42 by residue)
QMean score : 0.325
(partial model without unconserved sides chains):
PDB file :
Tito_4DA4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DA4-query.scw
PDB file :
Tito_Scwrl_4DA4.pdb
: