Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVKEKSLELPLGHPLVEKLCELSLNNKAAFNEKSEPNFKDEVSEEDKIKFKQALRVFHAIVNNETSLRY--------LSDENQKFLEDLAQAKKITNEQIEKTLEIVSDSDVDVDFEKLKKLMLNVDSVAVGLKSYSQNQLLDLDGGHWDL |
3U8P Chain:A ((53-140)) | ----------------------------------NDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDI----LVGQIDDALKLANE----GKVKEAQAAAEQLKTTRNAYHQKYRGGKLTLKFICTTG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3U8P.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 4931 for 539 contacts (9.1/contact) +
2D Compatibility (PS) -8701 + (NN) -5831 + (LL) 2896
1D Compatibility (HY) 2000 + (ID) 600
Total energy: -5305.0 ( -9.84 by residue)
QMean score : 0.473
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