Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------------------------------MDRISTETELNWEFVESLNENALSDLEERLEIGFSDAFKDFIKRSNYGFSQLRYFMVGNESYMFKHVLNFN----LESLLIDFMQSLKEWLEPEEIVFA--NDGYGGYYLWNTTTDVVLFLDTDNGSKKVLLNLNMFLKKLESRG
3FFV Chain:A ((1-181))
MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFY---TTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPLL
General information:
TITO was launched using:
RESULT:
Template:
3FFV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72972 for 929 contacts (-78.5/contact) +
2D Compatibility (PS) -14479 + (NN) -3583 + (LL) 136
1D Compatibility (HY) -4800 + (ID) 1050
Total energy: -96748.0 ( -104.14 by residue)
QMean score : 0.330
(partial model without unconserved sides chains):
PDB file :
Tito_3FFV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FFV-query.scw
PDB file :
Tito_Scwrl_3FFV.pdb
: