Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTLFSVYLFLSLNPLFLEAKEITWSQFLENFKNKNEDDKPKPLTIDKNNEKQQILDKNQQILKRALEKSLKFFFIFGYNYSQAAYSTTN-------QNLTLTANSIGFNTATGLEHFLRNHPKVGFRIFSVYNYFHSVSLSQ---------PQILMVQNYGGALDFSWIFVDKKTYRFRSYLGIALEQGVLLVDTIKTGSFTTIIPRTKKTFFQAPLRFGFIVDFIGYLSLQLGIEMPLVRNVFYTYNNHQERFKPRFNANLSLIVSF
3QQ2 Chain:A ((828-1010))
----------------------------------------------------------------------GGYYLDTVLRLGRYDQQYNIAGTDGGRVTADYRTSGAAWSLEGGRRFELP--NDWFAEPQAEVMLWRTSGKRYRASNGLRVKVDANTATLGRLGLRFGRRIALAGGNIVQPYARLGWTQEFKS--------------------GRVELGAGVDAALGKGHNLYASYEYAAG-----------DRINIPWSFHAGYRYSF
General information:
TITO was launched using:
RESULT:
Template:
3QQ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49768 for 904 contacts (-55.1/contact) +
2D Compatibility (PS) -15389 + (NN) 3616 + (LL) 6940
1D Compatibility (HY) 2800 + (ID) 650
Total energy: -52451.0 ( -58.02 by residue)
QMean score : 0.078
(partial model without unconserved sides chains):
PDB file :
Tito_3QQ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QQ2-query.scw
PDB file :
Tito_Scwrl_3QQ2.pdb
: