Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKLEVGQLAPDFRLKNSDGVEISLKDLLHKKVVLYFYPKDNTPGCTLEAKDFSALFSEFEKKNAVVVGVSPDNSQSHQKFISQCSLNVILLCDEDKKVANLYKAYGKRMLYGKEHLGIIRSTFIINTQGVLEKCFYNVKAKGHAQKVLESL
3GKN Chain:B ((9-157))
---LELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPK----GATTEGLDFNALLPEFDKAGAKILGVSRD--KSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAAL
General information:
TITO was launched using:
RESULT:
Template:
3GKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87784 for 1024 contacts (-85.7/contact) +
2D Compatibility (PS) -15307 + (NN) -3657 + (LL) 24
1D Compatibility (HY) -9200 + (ID) 2650
Total energy: -118574.0 ( -115.79 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_3GKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GKN-query.scw
PDB file :
Tito_Scwrl_3GKN.pdb
: