Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEKYHSDQEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKLKILSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNIKRILKQKSMASEEIGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEEEPEKLNAIARKHMRKEFESFKMGISGVNFAIANEGAIWLVENEGNG-RMSTTACDVHVAICGIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKNDD-LDGPKETHIILLDNNRSNILADEKYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLCGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVVKGAKSTQHSGMEKFSMKMFAKMASDGTKWRFQLKMAQFFSPLGKLLAPILPLVKEWASVRTLPNMDTSLHAKVQHLEGVIYE |
| 2G40 Chain:A ((40-212)) | -----------------------------------------------------------------SRAEILHQFEDRILDYGAAYTHVSA-AELPGAIAKALG--NARRVIVPAGIPAP-------WLTVGMDVLR---------------------------------D----------EP--------PLSHAELDRADAVLTGCAVAISETGTIILDHRADQGRRALSLIPDFHICVVREDQIVQTVREGVEAVAAS------VREGRPLTWLSGGS----GVHGPRRLQVIVVG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2G40.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -76815 for 1273 contacts (-60.3/contact) +
2D Compatibility (PS) -17469 + (NN) -6818 + (LL) 21088
1D Compatibility (HY) -4000 + (ID) 1450
Total energy: -85464.0 ( -67.14 by residue)
QMean score : 0.488
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