Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFSFLEKNPFFFTLAFIFVFSIAGLVEILPNFFKSA--RPIEGLRPYTVLETAGRQIYIQEGCYHCHSQLIRPFQAEVDRYGAYSLSGEYAYDRPFLWGSKRIGPDLHRVGDYRTTDWHEKHMLDPKSVVPHSIMPAYKHLFIKKSDFDTAYAEALTQKKVFGVPYDTENGVKLGNVEEAKKAYLEEAKKITADMKDKRVLEAIERGEVLEIVALIAYLNSLGNSRINANQNAK
3MK7 Chain:B ((6-201))
---KLEKNVGLLTLFMILAVSIGGLTQIVPLFFQDSVNEPVEGMKPYTALQLEGRDLYIREGCVGCHSQMIRPFRAETERYGHYSVAGESVYDHPFLWGSKRTGPDLARVGGRYSDDWHRAHLYNPRNVVPESKMPSYPWLVENTLDGKDTAKKMSALRM-LGVPYTE-EDIAG-------------ARDS--------------VNGKTEMDAMVAYLQVLGTALTNK-----
General information:
TITO was launched using:
RESULT:
Template:
3MK7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49616 for 1364 contacts (-36.4/contact) +
2D Compatibility (PS) -20425 + (NN) -9276 + (LL) 3300
1D Compatibility (HY) -14000 + (ID) 4500
Total energy: -94517.0 ( -69.29 by residue)
QMean score : 0.321
(partial model without unconserved sides chains):
PDB file :
Tito_3MK7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MK7-query.scw
PDB file :
Tito_Scwrl_3MK7.pdb
: