Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLNGLAGNLLIVVILLCVVVFFALKAIHIQKEQATNYYRYKDINALEAKNTQNHANYELVNQGSKK
2K5K Chain:A ((1-62))
MRDMTEETRKDLPP------EALRALAEAEERRRRAKALDLPKEIGGRNGPEPVRFGDWEKKGIAIDF
General information:
TITO was launched using:
RESULT:
Template:
2K5K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6458 for 197 contacts (-32.8/contact) +
2D Compatibility (PS) -6002 + (NN) 1971 + (LL) 996
1D Compatibility (HY) 2800 + (ID) 400
Total energy: -7093.0 ( -36.01 by residue)
QMean score : 0.243
(partial model without unconserved sides chains):
PDB file :
Tito_2K5K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K5K-query.scw
PDB file :
Tito_Scwrl_2K5K.pdb
: