Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIAMANFKSAMPVFKSHAYLKELEKTLKPQHFDRVFVFPDFLGLLPNAFLHFTLGAQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRVLLKESPSFLKEKFDFFKGKNFKIVYCIGEDLTTREKGFRAVKEFLSEQLENIDLNYSNLIVAYEPIWAIGTKKSASLEDIYLTHGFLKQILNQKTPLLYGGSVNAQNAKEILGIDSVDGLLIGSASLELENFKTIISFL
2JGQ Chain:B ((1-233))
-TKIAMANFKSAMPIFKSHAYLKELEKTLKPQHFDRVFVFPDFFGLLPNSFLHFTLGVQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRTLLKESPSFLKEKFDFFKSKNFKIVYCIGEELTTREKGFKAVKEFLSEQLENIDLNYPNLVVAYEPIWAIGT-KSASLEDIYLTHGFLKQILNQKTPLLYGGSVNTQNAKEILGIDSVDGLLIGSASWELENFKTIISFL
General information:
TITO was launched using:
RESULT:
Template:
2JGQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35450 for 2138 contacts (-16.6/contact) +
2D Compatibility (PS) -24466 + (NN) -9177 + (LL) 272
1D Compatibility (HY) -34800 + (ID) 10950
Total energy: -114571.0 ( -53.59 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_2JGQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JGQ-query.scw
PDB file :
Tito_Scwrl_2JGQ.pdb
: