Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMADVVVGIQWGDEGKGKIVDRIAKDYDFVVRYQGGHNAGHTIVHKGVKHSLHLMPSGVLYPKCKNIISSAVVVSVKDLCEEIS-----AFEDLENRLFISDRAHVILPYHAKKDAFKE------KSQNIGTTKKGIGPCYEDKMARSGIRMGDLLDDKILEEKLNAHFKAIEPFKKAYDLGENYEKDLMGYFKT---YAPKICPFIKDTTSMLIEA-NQKGEKILLEGAQGTLLDIDLGTYPFVTSSNTTSASACVSTGLNPKAINEVIGITKAYSTRVGNGPFPSEDTTPMGDHLRTKGVEFGTTTKRPRRCGWLDLVALKYACALNGCTQLALMKLDVLDGIDAIKVCVAYERKGERLEAFPSD---LKDCTPIYQTFKGWEK-SVGVRKLDDLEPNAREYIRFIEKEVGVKIGLISTSPEREDTIFL
1LNY Chain:B ((35-456))---VVLGAQWGDEGKGKVVDLLATDADIVSRCQGGNNAGHTVVVDGKEYDFHLLPSGIINTKAVSFIGNGVVIHLPGLFEEAEKNEKKGLKDWEKRLIISDRAHLVFDFHQAVDGLQEVQRQAQEGKNIGTTKKGIGPTYSSKAARTGLRICDLLSDF---DEFSARFKNLA--HQHQSMFPTLEIDVEGQLKRLKGFAERIRPMVRDGVYFMYEALHGPPKKVLVEGANAALLDIDFGTYPFVTSSNCTVGGVCTGLGIPPQNIGDVYGVVKAYTTRVGIGAFPTEQINEIGDLLQNRGHEWGVTTGRKRRCGWLDLMILRYAHMVNGFTALALTKLDILDVLSEIKVGISYKLNGKRIPYFPANQEILQKVEVEYETLPGWKADTTGARKWEDLPPQAQSYVRFVENHMGVAVKWVGVGKSRESMIQL


General information:
TITO was launched using:
RESULT:

Template: 1LNY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175273 for 3521 contacts (-49.8/contact) +
2D Compatibility (PS) -42983 + (NN) -8616 + (LL) 752
1D Compatibility (HY) -38000 + (ID) 9350
Total energy: -273470.0 ( -77.67 by residue)
QMean score : 0.469

(partial model without unconserved sides chains):
PDB file : Tito_1LNY.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1LNY-query.scw
PDB file : Tito_Scwrl_1LNY.pdb: