Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRADNRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGTND
3OO1 Chain:B ((6-124))
LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTPATLEEKLNKIFEKLG
General information:
TITO was launched using:
RESULT:
Template:
3OO1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74338 for 943 contacts (-78.8/contact) +
2D Compatibility (PS) -13129 + (NN) -7930 + (LL) -76
1D Compatibility (HY) -14400 + (ID) 3000
Total energy: -112873.0 ( -119.70 by residue)
QMean score : 0.752
(partial model without unconserved sides chains):
PDB file :
Tito_3OO1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OO1-query.scw
PDB file :
Tito_Scwrl_3OO1.pdb
: