Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNQASHLDNFMNAKNPKSFFDNKGNTKFIAITSGKGGVGKSNISANLAYSLYKKGYKVGVFDADIGLANLDVIFGVKTHKNILHALKGEAKLQEIICEIEPGLCLIPGDSGEEILKYISGAEALDRFVDE-EGVLSSLDYIVIDTGAGIGATTQAFLNASDCVVIVTTPDPSAITDAYACIK-INSKNKDELF-LIANMVAQPKEGRATYERLFKVAKNNIASLELHYLGAIENSSLLKRYVRERKILRKIAPNDLFSQSIDQIASLLVSKLETGTLEIPKEGLKSFFKRLLKYLG
4RZ3 Chain:B ((29-272))
-------------------------SPRTIAVTSGKGGVGKSNVSLNFSLSLSKLGFRVLLLDMAIGMGNIDILLGESSSLALADWFSARLPLSELVKSGPEHLSYIAGGTGAAQWQGLDTA-SIDRFLTELQAVASQYDYLIFDMGAGASGERLYFLKSVDDVFVVTTPEPTAMTDAYAMMKYMHAAGSEAPFSVIVNRAGKEREGYEVFERL-KHVTGRFLNKDIALLGIIPEDRTVARAVVSQTPFVLLDPAAKASKAVRQMAFRYAP--------------------------
General information:
TITO was launched using:
RESULT:
Template:
4RZ3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -170732 for 2069 contacts (-82.5/contact) +
2D Compatibility (PS) -26691 + (NN) -11750 + (LL) 2688
1D Compatibility (HY) -16000 + (ID) 3950
Total energy: -226435.0 ( -109.44 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_4RZ3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RZ3-query.scw
PDB file :
Tito_Scwrl_4RZ3.pdb
: