Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTEDRLSAEDKKFLEVERALKEAA-----LNPLRHATEELFGDFLKMENITEICYNGDKVVWVLKNNGEWQPFDVRNKKAFSLSRLMHFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYN---------------LLDNKEQA--ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFF-GGNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFKDLIDMIVHINHHKQCDEFYIKHR |
| 2GZA Chain:C ((13-312)) | ----------------EAAVKRAASVNFHLEPLR--------PWLDDPQITEVCVNRPGEVFCERASA-WEYYAVPN---LDYEHLISLGTATARFVDQDISD-SRPVLSAILPMGERIQIVRPPACEHG-TISVTIRKPSFTRRTLEDYAQQGFFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYP--PVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTFERLALMVLQNRQGRQLPYEIIRRLLYLVVDVVVHVHNGVHDGTGRHISE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GZA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -169021 for 1985 contacts (-85.1/contact) +
2D Compatibility (PS) -29543 + (NN) -16072 + (LL) 2252
1D Compatibility (HY) -24400 + (ID) 5650
Total energy: -242434.0 ( -122.13 by residue)
QMean score : 0.467
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