Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNGLEEKGYKAAVIKFDAASESDFVEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIENNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLKDELKADYVKNIPLNRLGSAKEVAEAVAFLLSDHSSYITGETLKVNGGLYM
4IJK Chain:B ((25-270))
MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVAS-------MGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIET--------------VKNIPLNRLGSAKEVAEAVAFLLSDHSSYITGETLKVNGGLY-
General information:
TITO was launched using:
RESULT:
Template:
4IJK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100138 for 1930 contacts (-51.9/contact) +
2D Compatibility (PS) -24353 + (NN) -5857 + (LL) 1180
1D Compatibility (HY) -30800 + (ID) 11100
Total energy: -171068.0 ( -88.64 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_4IJK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IJK-query.scw
PDB file :
Tito_Scwrl_4IJK.pdb
: