Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKMNAPDGVA-------VWVNEDRCKGCDICVSVCP-AGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVADRKDFKFAKVSKEAQERSEKVKANKYMLLEETILEGRGK
1HFE Chain:M ((12-84))
--EMHTPDPKADPDKLHFVQIDEAKCIGCDTCSQYCPTAAIFGE-------MGEPHSIPHIEACINCGQCLTHCPENAIYEAQSWVPEVEKKLKDGKVKCIAMPAPAVRYALGDAFGMPVG
General information:
TITO was launched using:
RESULT:
Template:
1HFE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46039 for 405 contacts (-113.7/contact) +
2D Compatibility (PS) -6547 + (NN) -1584 + (LL) 948
1D Compatibility (HY) -3200 + (ID) 1450
Total energy: -57872.0 ( -142.89 by residue)
QMean score : 0.345
(partial model without unconserved sides chains):
PDB file :
Tito_1HFE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HFE-query.scw
PDB file :
Tito_Scwrl_1HFE.pdb
: