Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVIIAANNLCLQYQQNEPVI---KHANLRIKRKDFVFISGPSGSGKSTLLRSFYGDLKVFSGKLEVCNINMNNASKSTILDLRKN-IGVVFQDYKLIQDYTIEQNIKLPMVI---CGIKKEECHLQLEKLLGHIDLRHK-ANRYPKELSGGEQQRVAMARAMANCPELILADEPTGNLDDYSSDKIWSLLRGMNTQLNATIVVVTHKFPKNFSAY-HRKFYIEEGEVYEYS
1L2T Chain:B ((1-223))
---MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKDGEVEREE
General information:
TITO was launched using:
RESULT:
Template:
1L2T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136547 for 1700 contacts (-80.3/contact) +
2D Compatibility (PS) -22991 + (NN) -5450 + (LL) 296
1D Compatibility (HY) -16000 + (ID) 4400
Total energy: -185092.0 ( -108.88 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_1L2T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L2T-query.scw
PDB file :
Tito_Scwrl_1L2T.pdb
: