Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLDHEKRRQLLNERHSCKMFDSHYEFSSTELEEIAEIARLSPSSYNTQPWHFVMVTNKDLKKQIAAHSYFNEEMIKSASALMVVCSLKPSELLPTSHYMQNLYPESYKVRVIPSFAQMLGVRFNHSMQKLESYILEQCYIAVGQICMGVSLMGLDSCIIGGFDPLKVGEILEERINKPKIVCLIALGKRVAEASKKSRKSKVDAITWL
3QDL Chain:D ((1-210))
MKFLDQEKRRQLLNERHSCKMFDSHYEFSSTELEEIAEIARLSPSSYNTQPWHFVMVTDKDLKKQIAAHSYFNEEMIKSASALMVVCSL--------------------------------------------SYILEQCYIAVGQICMGVSLMGLDSCIIGGFDPLKVGEVLEERIN-PKIACLIALGKRVAEASQKSRKSKVDAITWL
General information:
TITO was launched using:
RESULT:
Template:
3QDL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119286 for 1155 contacts (-103.3/contact) +
2D Compatibility (PS) -17644 + (NN) -3533 + (LL) 3204
1D Compatibility (HY) -25600 + (ID) 8000
Total energy: -170859.0 ( -147.93 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_3QDL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QDL-query.scw
PDB file :
Tito_Scwrl_3QDL.pdb
: