Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDTLFNESLNK--RFCFDEKVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKENVYHKSLPKPLIYDLGCSTGNFFIALNQQIQQD-IELVGIDNSMPMLKKAQEKLKDF---NNVRFECMDFLEVKFKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENIALLESVGFKHVEALFKWVNFTLLVARKT
4GEK Chain:G ((29-257))
------------LGDWTFDERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQ--------PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALKA
General information:
TITO was launched using:
RESULT:
Template:
4GEK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151514 for 1835 contacts (-82.6/contact) +
2D Compatibility (PS) -23947 + (NN) -7628 + (LL) 1276
1D Compatibility (HY) -17200 + (ID) 3850
Total energy: -202863.0 ( -110.55 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_4GEK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GEK-query.scw
PDB file :
Tito_Scwrl_4GEK.pdb
: