Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFSLSYVSKKFLSVLLLISLFLSACKSNNKDKLDENLLSSGTQSSKELNDKRDNIDKKSYAGLEDVFLDNKSISPNDKYMLLVFGRNGCSYCERLKKDLKNVKELRNYIKEHFSAYYVNISYSKEHNFKVGDKDKNDEKEIKMSTEELAQIYAVQSTPTIVLSDKTGKTIYELPGYMPSVQFLAVLEFIGDGKYQDTKNDEDLTKKLKAYIKYKTNLSKSKSS
4FYB Chain:A ((75-235))
------------------------------------------------------IDKKSYAGLEDVFSDNKSISPNDKYMLLVFGRNGCSYCERFKKDLKNVKELRDYIKEHFSAYYVNISYSKEHDFKVG--DKNNEKEIKMSTEELAQIYAVQSTPTIVLSDKTGKTIYELPGYMPSTQFLAVLEFIGDGKYQDTKDDEDLTKKLKAYIKYKTNL------
General information:
TITO was launched using:
RESULT:
Template:
4FYB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85798 for 1189 contacts (-72.2/contact) +
2D Compatibility (PS) -17444 + (NN) -11117 + (LL) 3168
1D Compatibility (HY) -21600 + (ID) 7700
Total energy: -140491.0 ( -118.16 by residue)
QMean score : 0.620
(partial model without unconserved sides chains):
PDB file :
Tito_4FYB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FYB-query.scw
PDB file :
Tito_Scwrl_4FYB.pdb
: