Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDWNEFEMGAVLFPFEKNAQSEMEKHNDERHYTEQSYFTTSVAHWRVAKPVHNNNICINCFNCWVYCPDAAIL-SREGKLKGVDYSHCKGCGVCVDVCPTNPKSLWMFEEQIEPATALTQWPQKQEKKKS
5C4I Chain:E ((247-303))
-------------------------------------------GNWRIQRPIIDREACTECYTCWIYCPDSCITRTEEGPVFNMKY--CKGCGLCTAVCPSGALTNVPELDFKD-----------------
General information:
TITO was launched using:
RESULT:
Template:
5C4I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16231 for 334 contacts (-48.6/contact) +
2D Compatibility (PS) -5683 + (NN) -1706 + (LL) 4652
1D Compatibility (HY) -6800 + (ID) 1200
Total energy: -26968.0 ( -80.74 by residue)
QMean score : 0.153
(partial model without unconserved sides chains):
PDB file :
Tito_5C4I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5C4I-query.scw
PDB file :
Tito_Scwrl_5C4I.pdb
: