Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKSAIFVLSGFLAFLLYALLLYGLL--LERHNKEAEKILLDLNKKDEQAIDLNLEDLPSEKKNEKIEKVTEKQGDFLEPKEEPKEEPEESLEDIFSSLNDFQEKTDKNAQKDEQKNEQEEQRRLREQQRLKQNQENQEMLKGLQQNLNQFTQKLESVKNKTLDLQIPKQDGVDEKAYQEWYAQIYQILYKGWRGVFYHKASVSVLIMITKDGEFDYTILSYSDFKDYNKSVMTLLDDLKKVDFPPYPGGNMISIKVNFTTKEEQ |
3X2F Chain:B ((344-401)) | ---------------LSFALQIFAVLYLLENHRKMSPKVYMLPDEIDERVARMKLDSL-----GVKIDELTEKQRRYLRSWQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3X2F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -1472 for 237 contacts (-6.2/contact) +
2D Compatibility (PS) -5944 + (NN) -2423 + (LL) 13560
1D Compatibility (HY) -5600 + (ID) 1000
Total energy: -2879.0 ( -12.15 by residue)
QMean score : 0.315
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