Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNFYDWIKEFVRDQGEFIAQQSGWLELERSSYAKLIAQTISHVLNGGSLLVSADSSRRWFLNYILSNLNPKDLKERPLLSVIDFNA--S-SFYPKNDANLSLATIELTYQNPMFWHVGRVENEGLKTLLLSKIPSFLWLFEELKEDCLLLKEHDSLLDYKLLQLFKLFENALFSALYNKVAL
2UVP Chain:A ((7-186))
MKNFYDWIKEFIRDQGEFIAQQSGWLELERSSYAKLIAQTISHVLNGGSLLVSADSSRHWFLNYILSNLNPKDLKERPLLSVIDFNASSFYPKN---DANLSLATIEMTYQNPMFWHVGKIENEGLKTILLSKIPSFLWLFEELKEDCLLLKEHDSLLDYKLLQLFKLFENALFSVLYNKVTL
General information:
TITO was launched using:
RESULT:
Template:
2UVP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113162 for 1187 contacts (-95.3/contact) +
2D Compatibility (PS) -18556 + (NN) -7534 + (LL) -156
1D Compatibility (HY) -28800 + (ID) 8250
Total energy: -176458.0 ( -148.66 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_2UVP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2UVP-query.scw
PDB file :
Tito_Scwrl_2UVP.pdb
: