Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKSNKKSNHLRAIYRALVIAIGLAVIIVFNYFNRKNNNARSSRRACSCFFSLTGVNLEKIGSFDTGAKLIVLNHQSLLDIIYLEAYHPSNICWIAKKELGEIPFYGHALTDTGMILIDREDKKGIVSLLKACKEKLDQNRPLVIFPEGTRGKGGEKFLPFKQGAKIIAEKFQLKIQPMVLINSIKIFNSKPLEAYKARTRLVMLESY-----TPDFSSPTWYEELQERMQKEYLKHYHELNA |
4R9U Chain:D ((58-92)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FAGQPLEAWSA-TKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAG |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R9U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -832 for 106 contacts (-7.8/contact) +
2D Compatibility (PS) -3212 + (NN) -1822 + (LL) 13652
1D Compatibility (HY) -2000 + (ID) 700
Total energy: 5086.0 ( 47.98 by residue)
QMean score : 0.085
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