Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAGIIGLGLMGGSLGLALQEWGRFKSVIGYDHNALHAKLALTLGLVDE-CVEFEKI--LECDVIFLAIPVEGIIECLKKMTPI-KKSATIIDLGGAKAQILHNIPKSIRQNFIAAHPMCGTEFYGPKASVKGLYENALVILCDLEDSGTEQVEIAKEIFLGIKARLIKMKSNEHDTHVAYISHLPHVLSYALANSVLKQNDPEM-ILSLAGGGFRDMSRLSKSSPLMWKDIFKQNRDNVLEAIEKCEKEIAQAKAWIENNDYESLAEWMAQANKLQEFM
3GGP Chain:D ((38-306))
----IVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGGGFKDFTRIAKSDPIMWRDIFLENKENVMKAIEGFEKSLNHLKELIVREAEEELVEYLKEVKIKRMEI
General information:
TITO was launched using:
RESULT:
Template:
3GGP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -169209 for 2023 contacts (-83.6/contact) +
2D Compatibility (PS) -28562 + (NN) -10030 + (LL) 244
1D Compatibility (HY) -22000 + (ID) 4300
Total energy: -233857.0 ( -115.60 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_3GGP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GGP-query.scw
PDB file :
Tito_Scwrl_3GGP.pdb
: