Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLIENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEIEVTSNYQTNISSGQASFTLNGLDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKENKLSAVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDA-SESIEMTLANNQILFKLKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTLENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEGDDIQISFSGTMRPFVLRPKDAANPNEILQLITPVRTY |
| 1VPK Chain:A ((1-366)) | MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNA-------AEISGEARFVVPGDVIQKMVKVLPDEITEL-SLEGDALVISSGSTVFRITTMPADEFPEITPAESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRLVASDGFRLALAEEQIEN--EEEASFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVETVMRVVDAEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIASKGSE-SVKF-EIEENVMRLVSKSPDYGEVVDEVEV-QKEGEDLVIAFNPKFIEDVLKHIETEEIEMNFVDSTSPCQINPLDIS---GYLYIVMPIRLA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VPK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -250937 for 3019 contacts (-83.1/contact) +
2D Compatibility (PS) -39551 + (NN) -11509 + (LL) 832
1D Compatibility (HY) -26400 + (ID) 4650
Total energy: -332215.0 ( -110.04 by residue)
QMean score : 0.541
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