Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MESVETNKNLPIEYRSEQGRLNI-LGFWIFLGAEIALFATLFATYFVMRKAGSNAGHPPAEMFELWLVLIMTFLLLTSSFTCGLAIGEMRKGNVKMLTIYSIITLILGAGFV---GFELYEFAHYVTEGVTMQVGSYWSAFFVLLGTHGLHVTVGIFWISFILIQIKMHGLTPKTASKVFISSLYWHFLDVVWIFIFTGVYLLGMVN
2YEV Chain:D ((597-790))
--ALEDEYSHPVEHHTVTGKSNAWMGMAWFIVSEVGLFAILIAGYLYLRLSG--AATPPEERPALWLALLNTFLLVSSSFTVHFAHHDLRRGRFNPFRFGLLVTIILGVLFFLVQSWEFYQFYHHSS----WQENLWTAAFFTIVGLHGLHVVIGGFGLILAYLQALRGKITLHNHGTLEAASMYWHLVDAVWLVIVTIFYV-----
General information:
TITO was launched using:
RESULT:
Template:
2YEV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -195226 for 1360 contacts (-143.5/contact) +
2D Compatibility (PS) -19299 + (NN) -5666 + (LL) 704
1D Compatibility (HY) -19200 + (ID) 3400
Total energy: -242087.0 ( -178.01 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_2YEV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YEV-query.scw
PDB file :
Tito_Scwrl_2YEV.pdb
: