Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDYIIAAHGRYAQEVKDSCQMITGQTTNISAITFTEEMGVTDVLDAYMAVYSP----VNETAIIVDIVGGTPCNAAQMFSTKHPEVKVVSGLSLGLIIPLSLGE-S------LEEAMLGAKDNIQFVEQKASHTIVSDDGEEED
3LFH Chain:A ((4-129))
KFVLIITHGDFGKGLLSGAEVIIGKQENVHTVGLNLGDNIEVVRKEVEKIIKEKLQEDKEIIIVVDLFGGSPFNIALSMMK-EYDVKVITGINMPMLVELLTSINVYDTTELLENISKIGKDGIKVI-----------------
General information:
TITO was launched using:
RESULT:
Template:
3LFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95270 for 811 contacts (-117.5/contact) +
2D Compatibility (PS) -12581 + (NN) -4263 + (LL) 844
1D Compatibility (HY) -10000 + (ID) 1300
Total energy: -122570.0 ( -151.13 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_3LFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LFH-query.scw
PDB file :
Tito_Scwrl_3LFH.pdb
: