Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGSNGIKHVRVDERLIHGQVATMWTNTIKATRIMIVDDAVVKNEMEKVALKTAVPAGVKLSILTVKGAANNINNDKYAGQQVFLIVKSPHALRGLVDAGVELPQINVGNMSTKAGSRQIKKSVSVTDENLEDFDYLAQKGIKITAQMVPSEDAVEFANLLKK
1NRZ Chain:B ((7-156))
---------RIDDRLIHGQVTTVWSKVANAQRIIICNDDVFNDEVRRTLLRQAAPPGMKVNVVSLEKAVAVYHNPQYQDETVFYLFTNPHDVLTMVRQGVQIATLNIGGMAWRPGKKQLTKAVSLDPQDIQAFRELDKLGVKLDLRVVASDPSV---NILDK
General information:
TITO was launched using:
RESULT:
Template:
1NRZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98405 for 1113 contacts (-88.4/contact) +
2D Compatibility (PS) -16346 + (NN) -5550 + (LL) 640
1D Compatibility (HY) -17200 + (ID) 2550
Total energy: -139411.0 ( -125.26 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_1NRZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NRZ-query.scw
PDB file :
Tito_Scwrl_1NRZ.pdb
: