Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGQIRMSPSELRDRAKTYGQSGRDIEDILSRLSQLQEQLRSEWEGQAFMRFDDQFEQLKPKVTEFANLMDQINDQLEKTANAVEEHDQQLSQNFGF
2VRZ Chain:B ((9-90))
-------SPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADAVQEQDQ--------
General information:
TITO was launched using:
RESULT:
Template:
2VRZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -977 for 466 contacts (-2.1/contact) +
2D Compatibility (PS) -8894 + (NN) -983 + (LL) 1040
1D Compatibility (HY) -6800 + (ID) 2050
Total energy: -18664.0 ( -40.05 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_2VRZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VRZ-query.scw
PDB file :
Tito_Scwrl_2VRZ.pdb
: