Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LYEKLVNKYQDEVTIREEKMPYKLPGLYLNGMIFISKDQSSIEKGCVLVEELMHYKYTVGNITKQETIMDKKQEIFARRKGYEELIPLDDIIACFYLGLREYFEVAEFLEVTEEFLRHTVSHY-----AEKYGPMYDYGGYFINFGNSIDVYKKF
4I1P Chain:C ((25-89))
--------------------------------------------------------------------------------------PLVDVYELTNLLRQLDFKVVSLLDLTEYEMRNAVDEFLLLLDKGVYGLLYYAGHGYENFGNSFMV----
General information:
TITO was launched using:
RESULT:
Template:
4I1P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19258 for 276 contacts (-69.8/contact) +
2D Compatibility (PS) -6186 + (NN) -1294 + (LL) 7480
1D Compatibility (HY) -4800 + (ID) 1050
Total energy: -25108.0 ( -90.97 by residue)
QMean score : 0.066
(partial model without unconserved sides chains):
PDB file :
Tito_4I1P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4I1P-query.scw
PDB file :
Tito_Scwrl_4I1P.pdb
: