Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAFYFEEPSRTFSEFLLVPGYSSAECVPTNVSLKTPIVKFKKGEESAITMNIPLVSAIMQAVSDDNMGIALATEGGVSFIFGSQSIESEAAMVSRVKNHKAGFVISDSNISPDKTLQDILDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRVTRMSPDEKVADFMTPFEKLVTANKSTTLKEANNIIWDNKLNALPLVDDNEHLVHMVFRKDYDSNKENKLELLDSSKRYVVGAGINTR-DYEERVPALVEAGADILCIDSSEGYSEWQKRTLDYVRGKYGDTVKVGAGNVVDRDGFRYLAEAGADFVKVGVGGGSICITREQKGIGRGQATALIDVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFSRFDESPTNKVNLNGTYMKEYWGEGANRARNWQRYDLGGDKKLSFEEGVDSYVPYAGSLKDNVAISLSKVRSTMCNCGALNIPELQQ-----KAKITLVSSTSIVEGGAHDVVVKDASNNLIK |
1NFB Chain:B ((31-498)) | ----------TYNDFLILPGY--IDFTADQVDLTSALTK-------KITLKTPLVSSPMDTVTEAGMAIAMALTGGIGFIHHNCTPEFQANEVRKVKKYEQGFITDPVVLSP-----------------GIPITDTGRMGS----------------------------------APAGITLKEANEILQRSKKGKLPIVNEDDE-VAIIA------NRDYPLASKDAKKQLLCGAAIGTHEDDKYRLDLLAQAGVDVVVLDSSQGNSIFQINMIKYIKDKYPNLQVIG-GNVVTAAQAKNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVYKVS----EYARRFGV--PVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGM------------------------------DKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSSAQ------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NFB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -200640 for 3091 contacts (-64.9/contact) +
2D Compatibility (PS) -39910 + (NN) -13965 + (LL) 7448
1D Compatibility (HY) -23200 + (ID) 6400
Total energy: -276667.0 ( -89.51 by residue)
QMean score : 0.484
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