Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLDFSKKTMQDFERDAEVVHATRERSFWRFMLADRRAVFATSVLILITVACIFAFLSPYDPNALSVQDKLMPPNSSHWFGTDDHGRDYLTRVLYGGRVSLLVGVFAMMIAVVVGTLAGTVSGYFGGFIDNIVMRFLDIFMSIPSFFLLMILNAYLKPGISNIIIIIGLLSWMEVARIVRAETLTLKEREFILYSKSSGGGFFHIMFKHIIPNAMPSIVVAASLNVATAILTESALSFLGLGVQQPNASWGSMLNNAQGYVGEATYLALFPGLLILMTILSFNVLGDVLRKGLSRRY
4YMU Chain:C ((1-214))
MTVDF-------------------------LSMVKYTPLFISGLIMTLKLTFLAVTIGVLMGLFIALMKM--------------------------SSIKPIKLVASSYIEVIRGT--------------PLLVQLLLIYNGLMQFGMNI-------PAFTAGVSALAINSSAYVAEIIRAGIQAV-DPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKESAIVSVIGFAD----------LTRQADIIQSVTYRYFEPYIIIAAIYFVMTLTFSKLLSLFERRL
General information:
TITO was launched using:
RESULT:
Template:
4YMU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -174909 for 1582 contacts (-110.6/contact) +
2D Compatibility (PS) -21934 + (NN) -3215 + (LL) 4304
1D Compatibility (HY) -13600 + (ID) 1900
Total energy: -211254.0 ( -133.54 by residue)
QMean score : 0.190
(partial model without unconserved sides chains):
PDB file :
Tito_4YMU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMU-query.scw
PDB file :
Tito_Scwrl_4YMU.pdb
: