Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTEKSGSPKWQLFKNILTYTIICLGGIIMLMPFVWMVSTAFKTGAANMVLPPQFIPKEPTTANFTQVF-EMFPMLRFLVNSVIVAVVTTLGQMLFCSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFGWL---------DSYAGLIVPAL-FS-VFGTFLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTFMQSWNSYLWPLIVTSSQEMATLPLGLSLLQGRYGTNYGLMMAGVLISVIPILAVYLFAQKYFIQGMAMSGMKE
2ONK Chain:C ((27-272))
-------------LFSALLALLSSIILLFVLLPVAATVTLQLFN-----------------FDEFLKAASDP-AVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFSPLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAY--YPMIAPTLIYERYLS--EGLSAAMPVAAILILLSLAVFVALRI-------------
General information:
TITO was launched using:
RESULT:
Template:
2ONK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -194073 for 1689 contacts (-114.9/contact) +
2D Compatibility (PS) -24015 + (NN) -4670 + (LL) 2624
1D Compatibility (HY) -14000 + (ID) 2050
Total energy: -236184.0 ( -139.84 by residue)
QMean score : 0.274
(partial model without unconserved sides chains):
PDB file :
Tito_2ONK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ONK-query.scw
PDB file :
Tito_Scwrl_2ONK.pdb
: