Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGKPVIHEFIVVEGRDDTTAINRSVIADTIETNGSALSQETIEKIRHAQE-LRGVIIFTDPDFPGEKIRKQIDSAVPGCKHAFINRQDALPKAGRGLGVEHASSANIREALENFHTSGAPTEKQFISKDILVHLGLLGGVGAKERREKIGNILKIGYTNGKQLQTRLESFAISEEQLVAACQKIMQEEENE
1GKU Chain:B ((610-676))
---------------------------------------RSRIEALRKLAHDAEFVIVGTDPDTEGEKIAWDLKNLLSGC----GAV--------KRAEFHEVTRRAILEALESLRDV--------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1GKU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10595 for 390 contacts (-27.2/contact) +
2D Compatibility (PS) -7361 + (NN) -2450 + (LL) 8596
1D Compatibility (HY) -3200 + (ID) 1000
Total energy: -16010.0 ( -41.05 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_1GKU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GKU-query.scw
PDB file :
Tito_Scwrl_1GKU.pdb
: