Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKPLIDMKNLTKTYTLGGETFKALDDVTFTVEQGEFLSIVGPSGSGKSTLMNMIGCLDVPDEGSYHLDDVDVFKLSDNKLSEIRNKKIGFIFQQFNLLPKLSAFENVELPLIY---AGLSVSAREKAAIECLEKVGLLEKRRNL-PTQLSGGQQQRVAIARALAGKPQILLADEPTGALDSKTGKEVMGILQELNRA-GNTIVMITHDPTIASYGTRSIRIQDGKLFHEEATQA
1L2T Chain:B ((1-227))
----MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE----
General information:
TITO was launched using:
RESULT:
Template:
1L2T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131908 for 1819 contacts (-72.5/contact) +
2D Compatibility (PS) -24209 + (NN) -10429 + (LL) 452
1D Compatibility (HY) -24000 + (ID) 6150
Total energy: -196244.0 ( -107.89 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_1L2T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L2T-query.scw
PDB file :
Tito_Scwrl_1L2T.pdb
: