Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN
2BEO Chain:A ((1-236))
-NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQEL----------AVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN
General information:
TITO was launched using:
RESULT:
Template:
2BEO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136181 for 1673 contacts (-81.4/contact) +
2D Compatibility (PS) -24502 + (NN) -6915 + (LL) 236
1D Compatibility (HY) -38000 + (ID) 11300
Total energy: -216662.0 ( -129.51 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_2BEO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BEO-query.scw
PDB file :
Tito_Scwrl_2BEO.pdb
: