Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYELVFLAAGQGKRMNAQKNKMWLELVGEPIFIHALRPFLADNRCSKVIVVCQEEERKHVKELMSQLNVAEH-RIEIVKGGSERQYSVAAGLERCGTGRVVLVHDGARPFITLDIIDRLLIGVEQSK-AAICAVKVKDTVKRVMNG--VVQETVDRENLWQVQTPQAFELPILRKAHQLARKEQFLGTDEASLVERIPCPVAIVQGSYYNIKLTTPEDMPLAKAILGELGGIAND
3N9W Chain:B ((10-226))
-----VVPAAG----------KQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-----FAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYL---------
General information:
TITO was launched using:
RESULT:
Template:
3N9W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145143 for 1619 contacts (-89.6/contact) +
2D Compatibility (PS) -21648 + (NN) -4914 + (LL) 1524
1D Compatibility (HY) -12000 + (ID) 4050
Total energy: -186231.0 ( -115.03 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_3N9W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N9W-query.scw
PDB file :
Tito_Scwrl_3N9W.pdb
: