Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKLIIVMLTIFTAVLVVGCSGTGTADKAETKKETTKESKQANAVKKEVKEMKSNLDDVKKAISDKDKSALQSSAAELHKHWLEFENNVRDLYPLQYTDVEKYETPIFYES----KNDNPNFDTLNDNATGLDGALDTLEKAKETKAKTSEVLDKAVDNYSKYVTEQVDEFVAQTEIFTNAVKSGDIEKAKAAYVS---PRLNYERIEPIAESFGDLDPKIDARINDVENEADWTGFHVIERALWEKKSLEGMDVYADKLLTDAKALQAEVKNLKLEPKPMVAGAMELLNEAATTKITGEEEAYSHTDLDDLNANVEGSKVVYQAIIPALNAQDKKLADQIDAAFNKMEDTLANYKNGDSFVLYTTLTKDQIRDISDQLSHLSELMAQTGKIF |
| 3U8P Chain:A ((39-147)) | ---------------------------------------------------------------------------------------------FGGSADLEDNMETLNDNLKVIEKAD--NAAQVKDALTKMRAAALDAQKATPPKLED-KSP---DSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYHQK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3U8P.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 650 for 669 contacts (1.0/contact) +
2D Compatibility (PS) -10393 + (NN) 256 + (LL) 20516
1D Compatibility (HY) 4000 + (ID) 1050
Total energy: 13979.0 ( 20.90 by residue)
QMean score : 0.368
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