Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRKIIAVTACATGVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVDTKVRNKERFD------GKVVLEVPVSAP-IK--DAEKVINAALALIDEK
3NBM Chain:A ((6-108))
-ELKVL--VLCAGSGTSAQL-ANAINEGANLTEVRVIANSGAYGAHYDI-----MGVYDLIILAPQVRSY-YREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLEHYQ--
General information:
TITO was launched using:
RESULT:
Template:
3NBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40173 for 716 contacts (-56.1/contact) +
2D Compatibility (PS) -10587 + (NN) -3912 + (LL) 1096
1D Compatibility (HY) -1600 + (ID) 600
Total energy: -55776.0 ( -77.90 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_3NBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NBM-query.scw
PDB file :
Tito_Scwrl_3NBM.pdb
: