Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIKNKVIIITGASSGIGKATALLLAEKGAKLVLAARRVEKLEKIVQTIKANSGEAIFAKTDVTKREDNKKLVELAIERYGKVDAIFLNAGIMPNSPLSALKEDEWEQMIDINIKGVLNGIAAVLPSFIAQKSGHIIATSSVAGLKAYPGGAVYGATKWAVRDLMEVLRMESAQEGTNIRTVTIYPAAINTELLETITDKETEQGMTSLYKQYGITPDRIASIVAYAIDQPEDVNVNEFTVGPTSQPW
3TFO Chain:D ((3-239))
---MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFAVRAISDGLR----QESTNIRVTCVNPGVVE---------------------AIALQPADIARAVRQVIEAPQSVDTTEITIRPTA---
General information:
TITO was launched using:
RESULT:
Template:
3TFO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142935 for 1831 contacts (-78.1/contact) +
2D Compatibility (PS) -23951 + (NN) -10551 + (LL) 2708
1D Compatibility (HY) -16400 + (ID) 4950
Total energy: -196079.0 ( -107.09 by residue)
QMean score : 0.686
(partial model without unconserved sides chains):
PDB file :
Tito_3TFO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TFO-query.scw
PDB file :
Tito_Scwrl_3TFO.pdb
: