Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MNIVLIASLIFIAQTCLGFFQVKYYQHHMNKVANKYAGKIGYHLYSEMERLKFRTSAVAILVVNENHIVHECQILTGKTVFAQFKTFTNYHHKELSEILTELSSKNKNTIQEKAIIKTVNSCMKAL
1AG2 Chain:A ((124-226))
GLGGYMLGSAM---SRPMIHFGNDWEDRYYRENMYRYPNQVYYRPVDQYS--------------NQNNFVHDCVNITIKQHTVTTTT----KGENFTETDVKMMERVVEQMCVTQYQKESQAYY---
General information:
TITO was launched using:
RESULT:
Template:
1AG2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26403 for 719 contacts (-36.7/contact) +
2D Compatibility (PS) -9720 + (NN) 6659 + (LL) 2900
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -30464.0 ( -42.37 by residue)
QMean score : 0.120
(partial model without unconserved sides chains):
PDB file :
Tito_1AG2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AG2-query.scw
PDB file :
Tito_Scwrl_1AG2.pdb
: