Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKLLIVDDAMFMRTMIKNIVKDSDFEVVAEAENGLEAVKKYDEVKPDIVTLDITMPEMDGLEALAQIMAKDPSAKVIMCSAMGQQGMVVDAIKKGAKDFIVKPFQADRVLEALEKAAK
4TMY Chain:B ((4-119))
--RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS-
General information:
TITO was launched using:
RESULT:
Template:
4TMY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66949 for 963 contacts (-69.5/contact) +
2D Compatibility (PS) -12842 + (NN) -11120 + (LL) 448
1D Compatibility (HY) -15200 + (ID) 3750
Total energy: -109413.0 ( -113.62 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_4TMY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TMY-query.scw
PDB file :
Tito_Scwrl_4TMY.pdb
: