Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIWIKSLLVITACIFSLTLLNTKYTFYSPTVKLESAKVVYKLNNEPFNVRLDVPLVNQMDAPTLFNGCEVTSLAMLLQFNGKRVTKNELANNLSTTPIEQNGLHGNPDKAFVGSISGD-SPGLGVNHAPIAKLAAKY-VNEAHVHDISGNSIQDIITVLSTGAPVWIITTTDYHAPK--NWQTVQTKEGKKKITYSMHSVIITGFDKNNFYINDPYGHK-NRAVKRSVLEEGWSAMGKQAIYLSRP
3ERV Chain:A ((29-226))
---------------------------------------------DEKVILSNVPFIQQL--PELDRGCEVTSLAMMLQYAGITVDKMKLANEIKKVDFMNDGVRGNPNEGFVGNIYTFSESGYGVYHGPLFQLAKKYLPN--KAVDLTGKSIEELYKSVKAGQPVVIITNATFAPLDEDEFTTWETNNGDVSITYNEHCVVLIGYDQESVYIRDPLKDSLDVKVPREKFEQAWVQMGSQAISYVKR
General information:
TITO was launched using:
RESULT:
Template:
3ERV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94009 for 1587 contacts (-59.2/contact) +
2D Compatibility (PS) -21169 + (NN) -8627 + (LL) 4672
1D Compatibility (HY) -18000 + (ID) 3650
Total energy: -140783.0 ( -88.71 by residue)
QMean score : 0.669
(partial model without unconserved sides chains):
PDB file :
Tito_3ERV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ERV-query.scw
PDB file :
Tito_Scwrl_3ERV.pdb
: