Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFDDSKPIYKQIVHYIHTEIVTGTYEAGDKLLSVRELATKLEVNPTTIQRAYAELEETEIIYTVRGTGKYLTEDKRRIEQLENDIAKQLTENFISEMSKLGINKEKIIAWVKKVEEVEVNVSGK
4R1H Chain:B ((6-119))
--FDDSKPIYKQIVHYIHTEIVTGTYEAGDKLLSVRELATKLEVNPTTIQRAYAELEETEIIYTVRGTGKYLTEDKRRIEQLENDIAKQLTENFISEMSKLGINKEKIIAWVKKVE---------
General information:
TITO was launched using:
RESULT:
Template:
4R1H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56897 for 712 contacts (-79.9/contact) +
2D Compatibility (PS) -12281 + (NN) -2702 + (LL) 840
1D Compatibility (HY) -15600 + (ID) 5700
Total energy: -92340.0 ( -129.69 by residue)
QMean score : 0.748
(partial model without unconserved sides chains):
PDB file :
Tito_4R1H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4R1H-query.scw
PDB file :
Tito_Scwrl_4R1H.pdb
: