Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LVIENRDFIQISTEKIKKEINNQKLVEMYKRCMENTLDTTIKIRDSGLTFILTGDIPAMWLRDSVCQVRPFLIFAKENEEIESMLIGLSKEQVSLVEIDPYANAFNETPNGAGHQADKTEMHPQVWERKYEIDSLCYPIQLAYLIWKITGRTEQFDAAFFKMLQTIFALWEVEQHHET-KSPYRFERLDCVPSDTLKRNGLGTETAYTGMLWSGFRPSDDACEYGYLIPSNMFAVVVLGYAKEIIEAFYPSEIETIKQAATLQNDIQLGIEKFGTYNHPTFGEIFAFEVDGLGNQLLMDDANVPSLLSMPIIEYLEKESPIYQNTRKFILSKSNPYYFEGKLAKGIGSPHTPAGYIWPIGLAIQGLTASDKSEKLEILQMLLRTDAGTGLMHESFHPDYPEDFTREWFSWANMMFCELVLDVAGFRMANVLKN |
2P0V Chain:A ((52-478)) | ----VSQEVERQIDHIKQLLTNAKLAWMFENCFPNTLDTTVHFDGKEDTFVYTGDIHAMWLRDSGAQVWPYVQLANKDPELKKMLAGVINRQFKCINIDPYANAFNMNSEGGEWMSDLTDMKPELHERKWEIDSLCYPIRLAYHYWKTTGDASVFSDEWLQAIANVLKTFKEQQRKDDAKGPYRFQRKTERALDTMTNDGWGNPVKPVGLIASAFRPSDDATTFQFLVPSNFFAVTSLRKAAEILNTVNRK-PALAKECTALADEVEKALKKYAVCNHPKYGKIYAFEVDGFGNQLLMDDANVPSLIALPYLGDVKVTDPIYQNTRKFVWSEDNPYFFKGSAGEGIGGPHIGYDMIWPMSIMMKAFTSQNDAEIKTCIKMLMDTDAGTGFMHESFNKNDPKNFTRAWFAWQNTLFGELILKLVNEGKVDLLN- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2P0V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -21448 for 3604 contacts (-6.0/contact) +
2D Compatibility (PS) -42015 + (NN) -1320 + (LL) 956
1D Compatibility (HY) 18800 + (ID) 1150
Total energy: -46177.0 ( -12.81 by residue)
QMean score : 0.147
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