Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LVKVVFVCLGNICRSPMAEGLFRKEVANAGLTDEIKIDSAATGTWNLGKPPHRGTQEVLKKHGVDYQAMRARKISDADFKEADFIIGMDQQNLADLNALNNNPDVI-IRSLMSFVSGQEDKDIPDPYYTGDFDETERMVTEGVKALLAYITKK
4ETM Chain:B ((18-170))
MISVLFVCLGNICRSPMAEAIFRDLAAKKGLEGKIKADSAGIGGWHIGNPPHEGTQEILRREGISFDGMLARQVSEQDLDDFDYIIAMDAENIGSLRSMAGFKNTSHIKRLLDYVEDSDLADVPDPYYTGNFEEVCQLIKTGCEQLLASIQKE
General information:
TITO was launched using:
RESULT:
Template:
4ETM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81209 for 1277 contacts (-63.6/contact) +
2D Compatibility (PS) -16823 + (NN) -10879 + (LL) 0
1D Compatibility (HY) -16400 + (ID) 3400
Total energy: -128711.0 ( -100.79 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_4ETM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ETM-query.scw
PDB file :
Tito_Scwrl_4ETM.pdb
: